RNA 3D Hub //

8OIN Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8OIN_0011/AA/8:18No text annotation
homologous
HL_4LFB_001
HL_73535.1
HL_8OIN_0021/AA/56:61No text annotation
HL_8OIN_0031/AA/89:93No text annotation
HL_8OIN_0041/AA/122:129No text annotation
HL_8OIN_0051/AA/147:153No text annotation
geometric
HL_5J7L_018
NA
HL_8OIN_0061/AA/160:165No text annotation
HL_8OIN_0081/AA/248:253GNRA
geometric
HL_1G1X_003
NA
HL_8OIN_0091/AA/342:351No text annotation
homologous
HL_4LFB_015
HL_38491.2
HL_8OIN_0101/AA/376:381GNRA
homologous
HL_4LFB_016
HL_34789.2
HL_8OIN_0111/AA/426:436No text annotation
homologous
HL_4LFB_017
HL_38491.2
HL_8OIN_0121/AA/467:477No text annotation
HL_8OIN_0131/AA/501:506Mini UNCG
geometric
HL_6TQA_003
NA
HL_8OIN_0691/AA/568:577No text annotation
homologous
HL_5J7L_021
NA
HL_8OIN_0151/AA/598:605No text annotation
HL_8OIN_0161/AA/636:641Mini UNCG
geometric
HL_5FQ5_002
HL_90436.2
HL_8OIN_0171/AA/664:670Pseudoknot geometry
geometric
HL_4GXY_003
HL_97725.1
HL_8OIN_0181/AA/728:734No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_8OIN_0191/AA/760:767T-loop with 2 stacked bulged bases
geometric
HL_4V9F_010
HL_13999.2
HL_8OIN_0201/AA/800:810No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_8OIN_0781/AA/881:887No text annotation
geometric
HL_7ENI_002
HL_19413.2
HL_8OIN_0221/AA/941:946GNRA
homologous
HL_4LFB_032
HL_34789.2
HL_8OIN_0231/AG/13:19tRNA D-loop
geometric
HL_2AZX_004
NA
HL_8OIN_0241/AG/28:36tRNA anticodon loop
geometric
HL_4TUE_034
NA
HL_8OIN_0791/B8/54:61No text annotation
geometric
HL_7A0S_006
HL_48677.1
HL_8OIN_0261/B8/80:86No text annotation
geometric
HL_7A0S_008
HL_76371.2
HL_8OIN_0271/B8/121:126GNRA
homologous
HL_4WF9_015
HL_34789.2
HL_8OIN_0281/B8/167:175No text annotation
geometric
HL_8C3A_039
NA
HL_8OIN_0291/B8/183:192T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_8OIN_0301/B8/220:225No text annotation
geometric
HL_4WF9_011
HL_75660.7
HL_8OIN_0711/B8/270:277No text annotation
geometric
HL_3FOZ_005
HL_37569.2
HL_8OIN_0321/B8/291:300No text annotation
homologous
HL_7RQB_023
NA
HL_8OIN_0331/B8/326:332No text annotation
homologous
HL_7RQB_024
NA
HL_8OIN_0341/B8/372:377No text annotation
homologous
HL_4WF9_025
HL_27530.1
HL_8OIN_0721/B8/401:410No text annotation
HL_8OIN_0361/B8/442:449GNRA
homologous
HL_7RQB_027
NA
HL_8OIN_0371/B8/462:469No text annotation
homologous
HL_5J7L_160
NA
HL_8OIN_0381/B8/509:519No text annotation
homologous
HL_5J7L_161
NA
HL_8OIN_0391/B8/536:543GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_98423.2
HL_8OIN_0401/B8/613:620No text annotation
geometric
HL_5E6M_002
HL_10874.1
HL_8OIN_0411/B8/653:658No text annotation
HL_8OIN_0731/B8/682:697No text annotation
HL_8OIN_0421/B8/688:693No text annotation
geometric
HL_5TBW_044
NA
HL_8OIN_0741/B8/719:737No text annotation
HL_8OIN_0431/B8/731:734Mini UNCG
geometric
HL_5B2T_002
HL_90436.2
HL_8OIN_0441/B8/760:767No text annotation
homologous
HL_7RQB_040
NA
HL_8OIN_0751/B8/829:839No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_8OIN_0461/B8/850:864No text annotation
HL_8OIN_0471/B8/887:892No text annotation
geometric
HL_5U3G_001
HL_75660.7
HL_8OIN_0481/B8/906:915No text annotation
homologous
HL_9DFE_046
HL_82185.1
HL_8OIN_0491/B8/944:952No text annotation
homologous
HL_7A0S_048
HL_61418.2
HL_8OIN_0501/B8/1022:1031No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_8OIN_0521/B8/1148:1156No text annotation
homologous
HL_7RQB_053
NA
HL_8OIN_0531/B8/1164:1176No text annotation
HL_8OIN_0541/B8/1187:1190No text annotation
geometric
HL_5J7L_176
NA
HL_8OIN_0551/B8/1198:1205GNRA with extra cWW
geometric
HL_4WF9_053
HL_87268.1
HL_8OIN_0561/B8/1238:1243No text annotation
geometric
HL_4V9F_003
HL_75660.7
HL_8OIN_0571/B8/1294:1302No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_8OIN_0581/B8/1351:1358GNRA variation
homologous
HL_7A0S_060
HL_46665.2
HL_8OIN_0591/B8/1374:1380No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_8OIN_0601/B8/1417:1422GNRA
homologous
HL_7RQB_063
NA
HL_8OIN_0611/B8/1461:1466GNRA
geometric
HL_3P22_001
HL_34789.2
HL_8OIN_0621/B8/1489:1495No text annotation
HL_8OIN_0801/B8/1513:1533No text annotation
HL_8OIN_0641/B8/1557:1565No text annotation
geometric
HL_5J7L_201
NA
HL_8OIN_0651/B9/12:24No text annotation
homologous
HL_4YYE_001
NA
HL_8OIN_0661/B9/32:40tRNA anticodon loop
homologous
HL_6UGG_005
HL_11974.2

Problematic loops

#loop idProblemSequence
HL_8OIN_007GNRA
HL_8OIN_068No text annotation
HL_8OIN_014No text annotation
HL_8OIN_021No text annotation
HL_8OIN_025No text annotation
HL_8OIN_070No text annotation
HL_8OIN_031GNRA wlth tandem sheared
HL_8OIN_035No text annotation
HL_8OIN_045No text annotation
HL_8OIN_051No text annotation
HL_8OIN_076tRNA anticodon loop
HL_8OIN_063No text annotation
HL_8OIN_077No text annotation
HL_8OIN_067No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8OIN_0011/AA/3:5,
1/AA/21:22		No text annotation
IL_8OIN_0021/AA/39:40,
1/AA/215:217		Single bulged A
geometric
IL_5J7L_002
NA
IL_8OIN_0031/AA/44:46,
1/AA/178:179		Single bulged A
geometric
IL_2VPL_002
IL_14190.2
IL_8OIN_0041/AA/48:50,
1/AA/175:176		Minor groove platform
homologous
IL_4LFB_004
IL_34520.2
IL_8OIN_0051/AA/78:79,
1/AA/103:105		Minor groove platform
geometric
IL_5ML7_009
IL_34520.2
IL_8OIN_0061/AA/81:85,
1/AA/97:101		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_8OIN_0071/AA/110:115,
1/AA/135:142		Kink-turn with non-sequential stacking
geometric
IL_4LFB_011
IL_46174.4
IL_8OIN_0081/AA/116:119,
1/AA/133:134		Major groove platform; stack outside cWW
geometric
IL_1NTA_003
IL_74641.2
IL_8OIN_1111/AA/116:120,
1/AA/131:134		No text annotation
IL_8OIN_0091/AA/119:120,
1/AA/131:133		No text annotation
IL_8OIN_0101/AA/186:189,
1/AA/210:212		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_8OIN_0111/AA/190:194,
1/AA/208:209		C-loop
homologous
IL_5J7L_018
NA
IL_8OIN_1121/AA/190:195,
1/AA/206:209		C-loop with extra cWW pair
geometric
IL_4V88_408
NA
IL_8OIN_0121/AA/194:195,
1/AA/206:208		Single bulged G
geometric
IL_5J7L_019
NA
IL_8OIN_0131/AA/226:228,
1/AA/269:271		Isolated cWH basepair
geometric
IL_5F5F_001
IL_10892.2
IL_8OIN_0141/AA/230:239,
1/AA/264:267		No text annotation
IL_8OIN_0151/AA/241:247,
1/AA/254:262		Kink-turn related
geometric
IL_4V88_415
NA
IL_8OIN_0161/AA/290:296,
1/AA/484:485		No text annotation
homologous
IL_5J7L_026
NA
IL_8OIN_0171/AA/301:305,
1/AA/397:401		UAA/GAN
geometric
IL_4V9F_037
IL_08938.1
IL_8OIN_1131/AA/306:321,
1/AA/389:396		No text annotation
IL_8OIN_0181/AA/327:334,
1/AA/360:367		No text annotation
IL_8OIN_0191/AA/339:341,
1/AA/352:355		No text annotation
IL_8OIN_0201/AA/414:418,
1/AA/444:445		Left turn
homologous
IL_5J7L_036
NA
IL_8OIN_0211/AA/419:423,
1/AA/439:443		tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_8OIN_0221/AA/491:500,
1/AA/507:514		10x8 Sarcin-Ricin; G-bulge
geometric
IL_6UFH_002
IL_22278.1
IL_8OIN_0231/AA/526:527,
1/AA/837:839		Single bulged A
homologous
IL_5J7L_039
NA
IL_8OIN_0241/AA/529:531,
1/AA/834:835		Single bulged G
homologous
IL_4LFB_036
IL_28408.2
IL_8OIN_0251/AA/537:541,
1/AA/824:828		No text annotation
IL_8OIN_1251/AA/559:560,
1/AA/710:712		Minor groove platform
homologous
IL_4LFB_038
IL_34520.2
IL_8OIN_1151/AA/595:607,
1/AA/695:700		No text annotation
IL_8OIN_0271/AA/608:610,
1/AA/693:694		Single bulged U
homologous
IL_4LFB_042
IL_97561.2
IL_8OIN_0281/AA/612:616,
1/AA/689:691		Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_8OIN_0291/AA/617:618,
1/AA/684:688		Minor groove platform
homologous
IL_6CZR_155
NA
IL_8OIN_0301/AA/620:621,
1/AA/680:682		Single bulged U
homologous
IL_4LFB_046
IL_97561.2
IL_8OIN_0311/AA/621:623,
1/AA/678:680		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_8OIN_0321/AA/629:632,
1/AA/652:655		Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_8OIN_0331/AA/633:634,
1/AA/643:651		Multiple bulged bases
geometric
IL_1R3E_001
IL_05670.1
IL_8OIN_0341/AA/749:754,
1/AA/773:778		No text annotation
IL_8OIN_0351/AA/843:845,
1/AA/927:930		No text annotation
homologous
IL_5J7L_058
NA
IL_8OIN_1161/AA/845:848,
1/AA/923:927		No text annotation
homologous
IL_5J7L_059
NA
IL_8OIN_0371/AA/849:851,
1/AA/920:922		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_8OIN_0381/AA/851:855,
1/AA/915:920		No text annotation
IL_8OIN_0391/AA/857:859,
1/AA/911:913		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_8OIN_1171/AA/860:863,
1/AA/907:910		Double sheared
homologous
IL_5J7L_062
NA
IL_8OIN_0411/AA/867:870,
1/AA/897:903		No text annotation
IL_8OIN_0421/AA/874:878,
1/AA/890:893		No text annotation
IL_8OIN_0461/B8/2:4,
1/B8/147:152		No text annotation
IL_8OIN_0471/B8/4:8,
1/B8/132:147		No text annotation
IL_8OIN_0481/B8/12:13,
1/B8/103:105		Single bulged A
homologous
IL_7A0S_002
IL_14190.2
IL_8OIN_0491/B8/14:70,
1/B8/95:102		No text annotation
IL_8OIN_0501/B8/70:73,
1/B8/92:95		Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_71194.2
IL_8OIN_0511/B8/73:79,
1/B8/87:92		7x6 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_251
NA
IL_8OIN_0531/B8/181:183,
1/B8/192:194		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
NA
IL_8OIN_0541/B8/214:216,
1/B8/230:232		Isolated non-canonical cWW pair
geometric
IL_1U9S_007
IL_01003.2
IL_8OIN_0551/B8/216:219,
1/B8/226:230		No text annotation
IL_8OIN_0561/B8/240:242,
1/B8/353:355		Isolated non-canonical cWW pair
homologous
IL_4WF9_020
IL_01003.2
IL_8OIN_0571/B8/242:246,
1/B8/346:353		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_8OIN_0581/B8/249:251,
1/B8/341:343		No text annotation
geometric
IL_3LA5_001
NA
IL_8OIN_0591/B8/259:261,
1/B8/316:318		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_8OIN_0601/B8/265:266,
1/B8/310:312		Single bulged A
geometric
IL_5J7L_261
NA
IL_8OIN_0611/B8/285:288,
1/B8/303:305		Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_8OIN_0621/B8/322:324,
1/B8/334:338		Multiple bulged bases
homologous
IL_5J7L_265
NA
IL_8OIN_0641/B8/394:400,
1/B8/411:417		No text annotation
geometric
IL_5XWG_002
IL_74768.1
IL_8OIN_0651/B8/478:480,
1/B8/588:589		Single bulged C
homologous
IL_5J7L_276
NA
IL_8OIN_1261/B8/502:504,
1/B8/524:526		No text annotation
IL_8OIN_0661/B8/504:507,
1/B8/521:524		No text annotation
homologous
IL_5J7L_285
NA
IL_8OIN_0671/B8/531:534,
1/B8/545:546		No text annotation
homologous
IL_6PRV_002
NA
IL_8OIN_0681/B8/640:647,
1/B8/1006:1012		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_8OIN_0691/B8/663:666,
1/B8/773:779		No text annotation
IL_8OIN_0701/B8/682:687,
1/B8/694:697		C-loop
homologous
IL_7RQB_051
NA
IL_8OIN_0711/B8/710:713,
1/B8/743:751		No text annotation
IL_8OIN_0721/B8/719:731,
1/B8/734:737		No text annotation
IL_8OIN_1271/B8/787:792,
1/B8/998:1000		No text annotation
IL_8OIN_0741/B8/798:800,
1/B8/990:992		Isolated tWW turn
homologous
IL_4WF9_063
IL_10432.1
IL_8OIN_0751/B8/801:804,
1/B8/988:989		Major groove platform; stack outside cWW
homologous
IL_7RQB_066
NA
IL_8OIN_1191/B8/801:809,
1/B8/985:989		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_8OIN_0761/B8/804:809,
1/B8/985:988		Intercalated tWH
geometric
IL_4WF9_065
IL_28217.1
IL_8OIN_0771/B8/809:817,
1/B8/982:985		No text annotation
IL_8OIN_0781/B8/822:823,
1/B8/975:977		Single bulged A
homologous
IL_7RQB_069
NA
IL_8OIN_0791/B8/880:883,
1/B8/898:899		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_8OIN_0801/B8/884:885,
1/B8/894:897		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_8OIN_0811/B8/928:929,
1/B8/959:962		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_8OIN_0821/B8/929:940,
1/B8/956:959		No text annotation
IL_8OIN_0831/B8/1045:1047,
1/B8/1440:1441		Major groove platform
homologous
IL_5J7L_320
NA
IL_8OIN_0841/B8/1049:1051,
1/B8/1435:1438		No text annotation
homologous
IL_4WF9_079
IL_80025.1
IL_8OIN_0861/B8/1062:1064,
1/B8/1265:1266		Single bulged U
geometric
IL_7RQB_080
NA
IL_8OIN_0871/B8/1065:1066,
1/B8/1261:1264		Minor groove platform
homologous
IL_7RQB_081
NA
IL_8OIN_1281/B8/1075:1078,
1/B8/1138:1140		No text annotation
geometric
IL_4V9F_053
IL_49140.1
IL_8OIN_0891/B8/1080:1082,
1/B8/1134:1136		Isolated non-canonical cWW pair
homologous
IL_4WF9_083
IL_01003.2
IL_8OIN_0901/B8/1085:1087,
1/B8/1126:1131		No text annotation
IL_8OIN_1221/B8/1186:1191,
1/B8/1212:1222		No text annotation
IL_8OIN_0911/B8/1192:1196,
1/B8/1207:1211		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_8OIN_0921/B8/1276:1277,
1/B8/1321:1323		Single stack bend
homologous
IL_4WF9_089
IL_15011.2
IL_8OIN_0931/B8/1277:1278,
1/B8/1319:1321		Major groove platform
geometric
IL_4V9F_082
IL_48076.8
IL_8OIN_0941/B8/1279:1282,
1/B8/1316:1318		Major groove platform with extra pair
homologous
IL_7RQB_093
NA
IL_8OIN_0951/B8/1282:1284,
1/B8/1312:1316		Major groove minor groove platform with extra cWW
geometric
IL_4WF9_092
IL_36931.2
IL_8OIN_0971/B8/1289:1293,
1/B8/1303:1307		Double sheared with non-canonical cWW
homologous
IL_7A0S_087
IL_87767.2
IL_8OIN_0981/B8/1330:1332,
1/B8/1402:1405		No text annotation
homologous
IL_5J7L_339
NA
IL_8OIN_0991/B8/1333:1335,
1/B8/1397:1401		Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_68118.2
IL_8OIN_1001/B8/1335:1336,
1/B8/1394:1397		No text annotation
homologous
IL_4WF9_096
IL_44609.2
IL_8OIN_1011/B8/1344:1346,
1/B8/1363:1367		No text annotation
IL_8OIN_1031/B8/1414:1415,
1/B8/1424:1426		Single bulged A
homologous
IL_7RQB_101
NA
IL_8OIN_1041/B8/1454:1461,
1/B8/1466:1472		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8OIN_1051/B8/1483:1487,
1/B8/1497:1499		C-loop
geometric
IL_7RQB_051
NA
IL_8OIN_1061/B8/1487:1489,
1/B8/1495:1497		Isolated non-canonical cWW pair
geometric
IL_6IA2_005
IL_01003.2
IL_8OIN_1071/B8/1507:1512,
1/B8/1534:1539		No text annotation
geometric
IL_4QLM_002
IL_74322.2

Problematic loops

#loop idProblemSequence
IL_8OIN_109No text annotation
IL_8OIN_110No text annotation
IL_8OIN_114No text annotation
IL_8OIN_026Minor groove platform with extra cWW
IL_8OIN_036No text annotation
IL_8OIN_040No text annotation
IL_8OIN_043Isolated non-canonical cWW pair
IL_8OIN_044Isolated non-canonical cWW pair
IL_8OIN_045Tandem non-canonical cWW pairs
IL_8OIN_052No text annotation
IL_8OIN_063Intercalated cWW
IL_8OIN_073No text annotation
IL_8OIN_118No text annotation
IL_8OIN_120Tandem non-canonical cWW pairs with near WC pairs
IL_8OIN_085Isolated non-canonical cWW pair
IL_8OIN_121No text annotation
IL_8OIN_088No text annotation
IL_8OIN_096Isolated non-canonical cWW pair
IL_8OIN_123Isolated non-canonical cWW contact
IL_8OIN_102Isolated non-canonical cWW pair
IL_8OIN_124No text annotation
IL_8OIN_108No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8OIN_0131/AA/31:34,
1/AA/222:226,
1/AA/271:274		No text annotation
J3_8OIN_0141/AA/41:44,
1/AA/179:186,
1/AA/212:214		No text annotation
J3_8OIN_0151/AA/326:327,
1/AA/367:375,
1/AA/382:384		No text annotation
geometric
J3_8B0X_003
J3_74074.1
J3_8OIN_0161/AA/542:545,
1/AA/788:794,
1/AA/816:823		No text annotation
homologous
J3_5J7L_052
NA
J3_8OIN_0031/AA/549:552,
1/AA/719:721,
1/AA/781:784		No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_8OIN_0211/AA/561:567,
1/AA/578:589,
1/AA/706:709		No text annotation
J3_8OIN_0051/AA/595:598,
1/AA/605:607,
1/AA/695:700		No text annotation
homologous
J3_5J7L_007
NA
J3_8OIN_0061/AA/623:628,
1/AA/656:663,
1/AA/671:678		No text annotation
J3_8OIN_0221/AA/721:725,
1/AA/737:749,
1/AA/778:781		No text annotation
J3_8OIN_0181/B8/8:11,
1/B8/106:120,
1/B8/127:132		No text annotation
J3_8OIN_0231/B8/14:54,
1/B8/61:70,
1/B8/95:102		No text annotation
J3_8OIN_0081/B8/251:257,
1/B8/320:322,
1/B8/338:341		No text annotation
homologous
J3_5J7L_038
NA
J3_8OIN_0091/B8/266:268,
1/B8/279:283,
1/B8/307:310		No text annotation
homologous
J3_7RQB_005
NA
J3_8OIN_0241/B8/482:502,
1/B8/526:531,
1/B8/546:586		No text annotation
J3_8OIN_0101/B8/669:676,
1/B8/755:759,
1/B8/768:770		No text annotation
J3_8OIN_0111/B8/676:678,
1/B8/701:708,
1/B8/753:755		No text annotation
J3_8OIN_0201/B8/1182:1183,
1/B8/1225:1236,
1/B8/1245:1251		No text annotation
J3_8OIN_0121/B8/1340:1343,
1/B8/1368:1370,
1/B8/1384:1390		No text annotation
homologous
J3_4WF9_009
J3_32601.6
J4_8OIN_0011/AA/52:55,
1/AA/62:69,
1/AA/156:158,
1/AA/167:173		No text annotation
J4_8OIN_0021/AA/71:77,
1/AA/106:108,
1/AA/144:147,
1/AA/153:154		No text annotation
J4_8OIN_0111/AA/296:298,
1/AA/404:409,
1/AA/450:461,
1/AA/483:484		No text annotation
homologous
J4_5J7L_003
NA
J4_8OIN_0121/AG/7:10,
1/AG/22:24,
1/AG/40:45,
1/AG/60:61		No text annotation
J4_8OIN_0051/B8/648:651,
1/B8/660:661,
1/B8/781:784,
1/B8/1003:1005		No text annotation
J4_8OIN_0061/B8/669:678,
1/B8/701:708,
1/B8/753:759,
1/B8/768:770		No text annotation
J4_8OIN_0071/B8/824:828,
1/B8/840:845,
1/B8/869:874,
1/B8/969:974		No text annotation
J4_8OIN_0081/B8/876:878,
1/B8/901:902,
1/B8/919:928,
1/B8/962:967		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_8OIN_0091/B8/1446:1448,
1/B8/1478:1479,
1/B8/1503:1505,
1/B8/1541:1543		No text annotation
J4_8OIN_0101/B9/7:10,
1/B9/26:28,
1/B9/44:49,
1/B9/62:63		tRNA junction
homologous
J4_5HR7_002
J4_95067.1
J5_8OIN_0041/B8/201:210,
1/B8/236:239,
1/B8/356:359,
1/B8/605:609,
1/B8/624:634		No text annotation
J5_8OIN_0021/B8/1052:1059,
1/B8/1269:1276,
1/B8/1323:1331,
1/B8/1403:1411,
1/B8/1429:1434		No text annotation
J5_8OIN_0051/B8/1069:1072,
1/B8/1143:1146,
1/B8/1158:1159,
1/B8/1181:1182,
1/B8/1251:1258		No text annotation
homologous
J5_7A0S_007
J5_39529.2
J6_8OIN_0011/B8/363:369,
1/B8/380:384,
1/B8/427:434,
1/B8/457:461,
1/B8/470:475,
1/B8/592:601		No text annotation
J6_8OIN_0031/B8/1069:1072,
1/B8/1143:1146,
1/B8/1158:1159,
1/B8/1181:1183,
1/B8/1225:1236,
1/B8/1245:1258		No text annotation
J6_8OIN_0021/B8/1069:1072,
1/B8/1143:1146,
1/B8/1158:1160,
1/B8/1180:1183,
1/B8/1225:1236,
1/B8/1245:1258		No text annotation

Problematic loops

#loop idProblemSequence
J3_8OIN_001No text annotation
J3_8OIN_002No text annotation
J3_8OIN_017No text annotation
J3_8OIN_004No text annotation
J3_8OIN_007No text annotation
J3_8OIN_019No text annotation
J4_8OIN_003No text annotation
J4_8OIN_004No text annotation
J5_8OIN_001No text annotation
J5_8OIN_003No text annotation

Coloring options:
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