HL_8OIN_016

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAAAAA

Length

6 nucleotides

Bulged bases

8OIN|1|AA|A|637, 8OIN|1|AA|A|640

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_016 not in the Motif Atlas

Geometric match to HL_5FQ5_002

Geometric discrepancy: 0.1022

The information below is about HL_5FQ5_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8OIN|1|AA|U|636
8OIN|1|AA|A|637
8OIN|1|AA|A|638
8OIN|1|AA|A|639
8OIN|1|AA|A|640
8OIN|1|AA|A|641

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

Mitoribosomal protein bs6m, mrps6

Chain AS

mS23

Chain Ab

Mitochondrial ribosomal protein S2

Chain Ad

28S ribosomal protein S5, mitochondrial isoform X2