HL_8OIN_030

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGAAC

Length

6 nucleotides

Bulged bases

8OIN|1|B8|G|222, 8OIN|1|B8|A|223, 8OIN|1|B8|A|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_030 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1745

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8OIN|1|B8|G|220
8OIN|1|B8|A|221
8OIN|1|B8|G|222
8OIN|1|B8|A|223
8OIN|1|B8|A|224
8OIN|1|B8|C|225

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BK

Mitochondrial ribosomal protein L35

Chain BN

Mitochondrial ribosomal protein L4

Chain BT

39S ribosomal protein L15, mitochondrial

Chain Bg

mL64

Chain Bx

Mrpl34

Chain Bz

Mitochondrial ribosomal protein L51