HL_8OIN_033

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

8OIN|1|B8|A|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_033 not in the Motif Atlas

Homologous match to HL_7RQB_024

Geometric discrepancy: 0.2821

The information below is about HL_7RQB_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74322.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

4

Unit IDs

8OIN|1|B8|U|326
8OIN|1|B8|G|327
8OIN|1|B8|A|328
8OIN|1|B8|A|329
8OIN|1|B8|A|330
8OIN|1|B8|A|331
8OIN|1|B8|G|332

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BL

uL2m

Chain Bu

Mitochondrial ribosomal protein L45