HL_8OIN_038

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

8OIN|1|B8|A|515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_038 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.2219

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8OIN|1|B8|C|509
8OIN|1|B8|C|510
8OIN|1|B8|U|511
8OIN|1|B8|A|512
8OIN|1|B8|A|513
8OIN|1|B8|A|514
8OIN|1|B8|A|515
8OIN|1|B8|G|516
8OIN|1|B8|C|517
8OIN|1|B8|A|518
8OIN|1|B8|G|519

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BQ

Mitochondrial ribosomal protein L11

Chain Bc

mL54