HL_8OIN_052

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUG(OMG)GGUGA

Length

9 nucleotides

Bulged bases

8OIN|1|B8|G|1150

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_052 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.1441

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIN|1|B8|U|1148
8OIN|1|B8|U|1149
8OIN|1|B8|G|1150
8OIN|1|B8|OMG|1151
8OIN|1|B8|G|1152
8OIN|1|B8|G|1153
8OIN|1|B8|U|1154
8OIN|1|B8|G|1155
8OIN|1|B8|A|1156

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(fMet)

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BD

Mitochondrial ribosomal protein L27

Chain BU

uL16m