HL_8OIN_056

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAAUUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_056 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2696

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8OIN|1|B8|A|1238
8OIN|1|B8|A|1239
8OIN|1|B8|A|1240
8OIN|1|B8|U|1241
8OIN|1|B8|U|1242
8OIN|1|B8|U|1243

Current chains

Chain B8

16S rRNA

Nearby chains

Chain B7

E-site tRNA

Chain BI

bL33m

Chain BK

Mitochondrial ribosomal protein L35

Chain Bg

mL64