HL_8OIN_064

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAGAACAG

Length

9 nucleotides

Bulged bases

8OIN|1|B8|U|1558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_064 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1432

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8OIN|1|B8|C|1557
8OIN|1|B8|U|1558
8OIN|1|B8|A|1559
8OIN|1|B8|G|1560
8OIN|1|B8|A|1561
8OIN|1|B8|A|1562
8OIN|1|B8|C|1563
8OIN|1|B8|A|1564
8OIN|1|B8|G|1565

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BH

Mitochondrial ribosomal protein L32

Chain BM

ICT1

Chain BV

bL17m

Chain BX

39S ribosomal protein L19, mitochondrial