HL_8OIN_071

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAAAGA

Length

8 nucleotides

Bulged bases

8OIN|1|B8|A|274, 8OIN|1|B8|G|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_071 not in the Motif Atlas

Geometric match to HL_3FOZ_005

Geometric discrepancy: 0.3734

The information below is about HL_3FOZ_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8OIN|1|B8|U|270
8OIN|1|B8|U|271
8OIN|1|B8|A|272
8OIN|1|B8|A|273
8OIN|1|B8|A|274
8OIN|1|B8|A|275
8OIN|1|B8|G|276
8OIN|1|B8|A|277

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1

Chain BL

uL2m

Chain Bm

Mitochondrial ribosomal protein L37