HL_8OIP_014
3D structure
- PDB id
- 8OIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUAAACCCC
- Length
- 10 nucleotides
- Bulged bases
- 8OIP|1|AA|C|576
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIP_014 not in the Motif Atlas
- Homologous match to HL_5J7L_021
- Geometric discrepancy: 0.3271
- The information below is about HL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8OIP|1|AA|G|568
8OIP|1|AA|A|569
8OIP|1|AA|U|570
8OIP|1|AA|A|571
8OIP|1|AA|A|572
8OIP|1|AA|A|573
8OIP|1|AA|C|574
8OIP|1|AA|C|575
8OIP|1|AA|C|576
8OIP|1|AA|C|577
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AG
- P-site Met-tRNA(fMet)
- Chain AH
- Mitochondrial ribosomal protein S10
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain Ag
- uS9m
Coloring options: