HL_8OIP_017

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAGCACA

Length

7 nucleotides

Bulged bases

8OIP|1|AA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIP_017 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.2477

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8OIP|1|AA|U|664
8OIP|1|AA|A|665
8OIP|1|AA|G|666
8OIP|1|AA|C|667
8OIP|1|AA|A|668
8OIP|1|AA|C|669
8OIP|1|AA|A|670

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AC

Mitochondrial ribosomal protein S24

Chain AF

Mitochondrial ribosomal protein S7

Chain AH

Mitochondrial ribosomal protein S10

Chain AK

Mitochondrial ribosomal protein S14

Chain Ag

uS9m