HL_8OIP_020
3D structure
- PDB id
- 8OIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAUAGAGUGC
- Length
- 11 nucleotides
- Bulged bases
- 8OIP|1|AA|U|803, 8OIP|1|AA|A|806, 8OIP|1|AA|U|808
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIP_020 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.3556
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8OIP|1|AA|G|800
8OIP|1|AA|A|801
8OIP|1|AA|A|802
8OIP|1|AA|U|803
8OIP|1|AA|A|804
8OIP|1|AA|G|805
8OIP|1|AA|A|806
8OIP|1|AA|G|807
8OIP|1|AA|U|808
8OIP|1|AA|G|809
8OIP|1|AA|C|810
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AH
- Mitochondrial ribosomal protein S10
- Chain AK
- Mitochondrial ribosomal protein S14
- Chain AZ
- Mitochondrial ribosomal protein S33
- Chain Ag
- uS9m
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