HL_8OIP_021

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAACCUAUA

Length

9 nucleotides

Bulged bases

8OIP|1|AA|C|884, 8OIP|1|AA|U|885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIP_021 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3584

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8OIP|1|AA|U|880
8OIP|1|AA|A|881
8OIP|1|AA|A|882
8OIP|1|AA|C|883
8OIP|1|AA|C|884
8OIP|1|AA|U|885
8OIP|1|AA|A|886
8OIP|1|AA|U|887
8OIP|1|AA|A|888

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AV

Mitochondrial ribosomal protein S27

Chain Aj

Mitochondrial ribosomal protein S34