HL_8OIQ_004
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGGAGAU
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIQ_004 not in the Motif Atlas
- Geometric match to HL_7A0S_008
- Geometric discrepancy: 0.1903
- The information below is about HL_7A0S_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76371.2
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8OIQ|1|B8|A|80
8OIQ|1|B8|G|81
8OIQ|1|B8|G|82
8OIQ|1|B8|A|83
8OIQ|1|B8|G|84
8OIQ|1|B8|A|85
8OIQ|1|B8|U|86
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain B7
- E-site tRNA
- Chain BE
- Mitochondrial ribosomal protein L28
- Chain BK
- 39S ribosomal protein L35, mitochondrial
- Chain BO
- Mitochondrial ribosomal protein L9
- Chain BT
- 39S ribosomal protein L15, mitochondrial
- Chain Bz
- Mitochondrial ribosomal protein L51
Coloring options: