HL_8OIQ_012

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUUAG

Length

6 nucleotides

Bulged bases

8OIQ|1|B8|U|373, 8OIQ|1|B8|A|376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_012 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.1935

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

8OIQ|1|B8|U|372
8OIQ|1|B8|U|373
8OIQ|1|B8|U|374
8OIQ|1|B8|U|375
8OIQ|1|B8|A|376
8OIQ|1|B8|G|377

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BT

39S ribosomal protein L15, mitochondrial