HL_8OIQ_033

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_033 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.1664

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8OIQ|1|B8|C|1198
8OIQ|1|B8|A|1199
8OIQ|1|B8|A|1200
8OIQ|1|B8|A|1201
8OIQ|1|B8|C|1202
8OIQ|1|B8|C|1203
8OIQ|1|B8|A|1204
8OIQ|1|B8|G|1205

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BD

Mitochondrial ribosomal protein L27

Chain BK

39S ribosomal protein L35, mitochondrial

Chain BT

39S ribosomal protein L15, mitochondrial

Chain Bn

Mitochondrial ribosomal protein L38