HL_8OIQ_035

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGUUCCUAU

Length

9 nucleotides

Bulged bases

8OIQ|1|B8|U|1296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_035 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1905

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8OIQ|1|B8|A|1294
8OIQ|1|B8|G|1295
8OIQ|1|B8|U|1296
8OIQ|1|B8|U|1297
8OIQ|1|B8|C|1298
8OIQ|1|B8|C|1299
8OIQ|1|B8|U|1300
8OIQ|1|B8|A|1301
8OIQ|1|B8|U|1302

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain Bc

mL54

Chain Bl

Ribosomal protein