HL_8OIQ_036

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCAACCG

Length

8 nucleotides

Bulged bases

8OIQ|1|B8|G|1352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_036 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1386

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8OIQ|1|B8|U|1351
8OIQ|1|B8|G|1352
8OIQ|1|B8|C|1353
8OIQ|1|B8|A|1354
8OIQ|1|B8|A|1355
8OIQ|1|B8|C|1356
8OIQ|1|B8|C|1357
8OIQ|1|B8|G|1358

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain Bl

Ribosomal protein