HL_8OIQ_047

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAAAGA

Length

8 nucleotides

Bulged bases

8OIQ|1|B8|A|274, 8OIQ|1|B8|G|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_047 not in the Motif Atlas

Geometric match to HL_3FOZ_005

Geometric discrepancy: 0.3798

The information below is about HL_3FOZ_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8OIQ|1|B8|U|270
8OIQ|1|B8|U|271
8OIQ|1|B8|A|272
8OIQ|1|B8|A|273
8OIQ|1|B8|A|274
8OIQ|1|B8|A|275
8OIQ|1|B8|G|276
8OIQ|1|B8|A|277

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BL

Mitochondrial ribosomal protein L2

Chain Bm

Mitochondrial ribosomal protein L37