HL_8OIR_001

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

8OIR|1|AA|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1233

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8OIR|1|AA|U|7
8OIR|1|AA|U|8
8OIR|1|AA|U|9
8OIR|1|AA|G|10
8OIR|1|AA|G|11
8OIR|1|AA|U|12
8OIR|1|AA|C|13
8OIR|1|AA|C|14
8OIR|1|AA|U|15
8OIR|1|AA|A|16
8OIR|1|AA|G|17

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AI

mRNA

Chain Ad

28S ribosomal protein S5, mitochondrial