HL_8OIR_004

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_004 not in the Motif Atlas

Geometric match to HL_6N2V_002

Geometric discrepancy: 0.0825

The information below is about HL_6N2V_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8OIR|1|AA|A|121
8OIR|1|AA|G|122
8OIR|1|AA|C|123
8OIR|1|AA|A|124
8OIR|1|AA|A|125
8OIR|1|AA|U|126

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

28S ribosomal protein S15, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial