HL_8OIR_007

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_007 not in the Motif Atlas

Homologous match to HL_4LFB_010

Geometric discrepancy: 0.1982

The information below is about HL_4LFB_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8OIR|1|AA|C|195
8OIR|1|AA|G|196
8OIR|1|AA|A|197
8OIR|1|AA|A|198
8OIR|1|AA|A|199
8OIR|1|AA|G|200

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AO

28S ribosomal protein S18b, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial

Chain Aj

28S ribosomal protein S34, mitochondrial