HL_8OIR_015

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUGAA

Length

7 nucleotides

Bulged bases

8OIR|1|AA|A|636, 8OIR|1|AA|U|637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_015 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3181

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8OIR|1|AA|U|634
8OIR|1|AA|G|635
8OIR|1|AA|A|636
8OIR|1|AA|U|637
8OIR|1|AA|G|638
8OIR|1|AA|A|639
8OIR|1|AA|A|640

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

28S ribosomal protein S6, mitochondrial

Chain AS

28S ribosomal protein S23, mitochondrial

Chain Ab

28S ribosomal protein S2, mitochondrial

Chain Ad

28S ribosomal protein S5, mitochondrial