HL_8OIR_018

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGAAACUU

Length

9 nucleotides

Bulged bases

8OIR|1|AA|C|758, 8OIR|1|AA|U|759

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_018 not in the Motif Atlas

Geometric match to HL_3F2X_001

Geometric discrepancy: 0.1217

The information below is about HL_3F2X_001

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8OIR|1|AA|A|752
8OIR|1|AA|U|753
8OIR|1|AA|G|754
8OIR|1|AA|A|755
8OIR|1|AA|A|756
8OIR|1|AA|A|757
8OIR|1|AA|C|758
8OIR|1|AA|U|759
8OIR|1|AA|U|760

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial

Chain Bd

39S ribosomal protein L55, mitochondrial