HL_8OIR_020

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAACUAA

Length

7 nucleotides

Bulged bases

8OIR|1|AA|C|878, 8OIR|1|AA|U|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_020 not in the Motif Atlas

Geometric match to HL_5M3H_001

Geometric discrepancy: 0.2629

The information below is about HL_5M3H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

8OIR|1|AA|U|875
8OIR|1|AA|A|876
8OIR|1|AA|A|877
8OIR|1|AA|C|878
8OIR|1|AA|U|879
8OIR|1|AA|A|880
8OIR|1|AA|A|881

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AV

28S ribosomal protein S27, mitochondrial

Chain Aj

28S ribosomal protein S34, mitochondrial