HL_8OIR_021

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG(MA6)(MA6)A

Length

6 nucleotides

Bulged bases

8OIR|1|AA|G|935

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_021 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.104

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8OIR|1|AA|U|933
8OIR|1|AA|G|934
8OIR|1|AA|G|935
8OIR|1|AA|MA6|936
8OIR|1|AA|MA6|937
8OIR|1|AA|A|938

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A-interacting protein

Chain B8

Large subunit ribosomal RNA; LSU rRNA