HL_8OIR_023
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCC(RSQ)AUACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: RSQ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIR_023 not in the Motif Atlas
- Geometric match to HL_4TUE_034
- Geometric discrepancy: 0.0926
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8OIR|1|AG|G|28
8OIR|1|AG|C|29
8OIR|1|AG|C|30
8OIR|1|AG|RSQ|31
8OIR|1|AG|A|32
8OIR|1|AG|U|33
8OIR|1|AG|A|34
8OIR|1|AG|C|35
8OIR|1|AG|C|36
Current chains
- Chain AG
- P-site Met-tRNA(Met)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- mRNA
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain Ag
- 28S ribosomal protein S9, mitochondrial
Coloring options: