HL_8OIR_044

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

8OIR|1|B8|A|760, 8OIR|1|B8|A|762, 8OIR|1|B8|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_044 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1251

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8OIR|1|B8|C|758
8OIR|1|B8|A|759
8OIR|1|B8|A|760
8OIR|1|B8|C|761
8OIR|1|B8|A|762
8OIR|1|B8|C|763
8OIR|1|B8|A|764
8OIR|1|B8|G|765

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BA

39S ribosomal protein L22, mitochondrial

Chain BJ

39S ribosomal protein L34, mitochondrial

Chain Bq

39S ribosomal protein L41, mitochondrial

Chain Bu

39S ribosomal protein L45, mitochondrial