HL_8OIR_052
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUG(OMG)GGCGA
- Length
- 9 nucleotides
- Bulged bases
- 8OIR|1|B8|G|1144
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIR_052 not in the Motif Atlas
- Homologous match to HL_7RQB_053
- Geometric discrepancy: 0.0711
- The information below is about HL_7RQB_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIR|1|B8|U|1142
8OIR|1|B8|U|1143
8OIR|1|B8|G|1144
8OIR|1|B8|OMG|1145
8OIR|1|B8|G|1146
8OIR|1|B8|G|1147
8OIR|1|B8|C|1148
8OIR|1|B8|G|1149
8OIR|1|B8|A|1150
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain AG
- P-site Met-tRNA(Met)
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain BD
- 39S ribosomal protein L27, mitochondrial
- Chain BU
- 39S ribosomal protein L16, mitochondrial
Coloring options: