HL_8OIR_055

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_055 not in the Motif Atlas

Geometric match to HL_5TBW_019

Geometric discrepancy: 0.081

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OIR|1|B8|A|1232
8OIR|1|B8|U|1233
8OIR|1|B8|A|1234
8OIR|1|B8|A|1235
8OIR|1|B8|C|1236
8OIR|1|B8|U|1237

Current chains

Chain B8

16S rRNA

Nearby chains

Chain B7

E-site tRNA

Chain BI

39S ribosomal protein L33, mitochondrial

Chain BK

39S ribosomal protein L35, mitochondrial