HL_8OIR_056

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_056 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1543

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8OIR|1|B8|A|1288
8OIR|1|B8|G|1289
8OIR|1|B8|U|1290
8OIR|1|B8|C|1291
8OIR|1|B8|C|1292
8OIR|1|B8|A|1293
8OIR|1|B8|U|1294
8OIR|1|B8|A|1295
8OIR|1|B8|U|1296

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BU

39S ribosomal protein L16, mitochondrial

Chain Bl

39S ribosomal protein L36, mitochondrial