HL_8OIR_057

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAGCCG

Length

8 nucleotides

Bulged bases

8OIR|1|B8|G|1346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_057 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1363

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8OIR|1|B8|U|1345
8OIR|1|B8|G|1346
8OIR|1|B8|C|1347
8OIR|1|B8|A|1348
8OIR|1|B8|G|1349
8OIR|1|B8|C|1350
8OIR|1|B8|C|1351
8OIR|1|B8|G|1352

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain Bl

39S ribosomal protein L36, mitochondrial