HL_8OIR_062
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAUGAUAUCAUCUCAACU
- Length
- 18 nucleotides
- Bulged bases
- 8OIR|1|B8|U|1513, 8OIR|1|B8|C|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIR_062 not in the Motif Atlas
- Geometric match to HL_7A0S_074
- Geometric discrepancy: 0.2556
- The information below is about HL_7A0S_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28904.1
- Basepair signature
- cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8OIR|1|B8|A|1506
8OIR|1|B8|A|1507
8OIR|1|B8|U|1508
8OIR|1|B8|G|1509
8OIR|1|B8|A|1510
8OIR|1|B8|U|1511
8OIR|1|B8|A|1512
8OIR|1|B8|U|1513
8OIR|1|B8|C|1514
8OIR|1|B8|A|1515
8OIR|1|B8|U|1516
8OIR|1|B8|C|1517
8OIR|1|B8|U|1518
8OIR|1|B8|C|1519
8OIR|1|B8|A|1520
8OIR|1|B8|A|1521
8OIR|1|B8|C|1522
8OIR|1|B8|U|1523
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BR
- 39S ribosomal protein L13, mitochondrial
- Chain Bb
- 39S ribosomal protein L53, mitochondrial
- Chain Bh
- 39S ribosomal protein S18a, mitochondrial
- Chain Bl
- 39S ribosomal protein L36, mitochondrial
Coloring options: