HL_8OIS_020

3D structure

PDB id

8OIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAACUAA

Length

7 nucleotides

Bulged bases

8OIS|1|AA|C|878, 8OIS|1|AA|U|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIS_020 not in the Motif Atlas

Geometric match to HL_5M3H_001

Geometric discrepancy: 0.2628

The information below is about HL_5M3H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

8OIS|1|AA|U|875
8OIS|1|AA|A|876
8OIS|1|AA|A|877
8OIS|1|AA|C|878
8OIS|1|AA|U|879
8OIS|1|AA|A|880
8OIS|1|AA|A|881

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AV

28S ribosomal protein S27, mitochondrial

Chain Aj

28S ribosomal protein S34, mitochondrial