RNA 3D Hub //

8OIS Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8OIS_0011/AA/7:17No text annotation
homologous
HL_4LFB_001
HL_73535.3
HL_8OIS_0021/AA/54:61No text annotation
HL_8OIS_0031/AA/87:93No text annotation
geometric
HL_6U8D_003
HL_01957.1
HL_8OIS_0041/AA/121:126GNRA
geometric
HL_6N2V_002
HL_34789.6
HL_8OIS_0051/AA/145:149No text annotation
geometric
HL_5TBW_004
NA
HL_8OIS_0061/AA/157:162No text annotation
HL_8OIS_0071/AA/195:200GNRA
homologous
HL_4LFB_010
HL_34789.6
HL_8OIS_0081/AA/247:252GNRA
geometric
HL_1G1X_003
NA
HL_8OIS_0091/AA/342:351No text annotation
geometric
HL_4LFB_015
HL_38491.4
HL_8OIS_0101/AA/376:381GNRA
geometric
HL_4V88_207
NA
HL_8OIS_0111/AA/427:437No text annotation
homologous
HL_4LFB_017
HL_38491.4
HL_8OIS_0121/AA/468:479No text annotation
HL_8OIS_0131/AA/503:508Mini UNCG
geometric
HL_6TQA_003
NA
HL_8OIS_0141/AA/570:579No text annotation
homologous
HL_5J7L_021
NA
HL_8OIS_0151/AA/634:640No text annotation
geometric
HL_5U3G_001
HL_75660.10
HL_8OIS_0161/AA/663:668No text annotation
HL_8OIS_0171/AA/726:732No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_8OIS_0181/AA/752:760T-loop with 2 bulged bases not stacked
geometric
HL_3F2X_001
HL_13999.5
HL_8OIS_0191/AA/793:803No text annotation
homologous
HL_4LFB_030
HL_86432.3
HL_8OIS_0201/AA/875:881No text annotation
geometric
HL_5M3H_001
NA
HL_8OIS_0211/AA/933:938GNRA
homologous
HL_4LFB_032
HL_34789.6
HL_8OIS_0221/AG/13:19tRNA D-loop
geometric
HL_3AL0_001
NA
HL_8OIS_0231/AG/28:36tRNA anticodon loop
geometric
HL_4TUE_034
NA

Problematic loops

#loop idProblemSequence
HL_8OIS_024No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8OIS_0011/AA/2:4,
1/AA/20:21		Single bulged U
geometric
IL_1S03_005
IL_97561.7
IL_8OIS_0021/AA/27:29,
1/AA/274:276		No text annotation
geometric
IL_1NBS_006
NA
IL_8OIS_0031/AA/38:39,
1/AA/212:214		Single bulged A
homologous
IL_5J7L_002
NA
IL_8OIS_0041/AA/43:45,
1/AA/175:176		Single bulged A
geometric
IL_6WPI_001
IL_14190.4
IL_8OIS_0051/AA/47:49,
1/AA/172:173		Minor groove platform
homologous
IL_4LFB_004
IL_41261.1
IL_8OIS_0061/AA/80:82,
1/AA/97:100		Minor groove platform with extra cWW
geometric
IL_7RQB_031
NA
IL_8OIS_0071/AA/82:85,
1/AA/95:97		Minor groove platform with extra cWW
geometric
IL_7RQB_031
NA
IL_8OIS_0081/AA/109:114,
1/AA/132:139		Kink-turn with non-sequential stacking
geometric
IL_4LFB_011
IL_46174.6
IL_8OIS_0091/AA/115:118,
1/AA/130:131		Major groove platform; stack outside cWW
geometric
IL_3DIL_004
IL_74641.4
IL_8OIS_0491/AA/115:119,
1/AA/128:131		No text annotation
IL_8OIS_0101/AA/118:119,
1/AA/128:130		No text annotation
IL_8OIS_0111/AA/183:185,
1/AA/208:209		Single bulged U
homologous
IL_5J7L_017
NA
IL_8OIS_0121/AA/187:191,
1/AA/205:206		C-loop
geometric
IL_5J7L_018
NA
IL_8OIS_0131/AA/191:192,
1/AA/203:205		Single bulged G
homologous
IL_5J7L_019
NA
IL_8OIS_0141/AA/229:238,
1/AA/263:266		No text annotation
IL_8OIS_0151/AA/240:246,
1/AA/253:261		Kink-turn related
geometric
IL_4V88_415
NA
IL_8OIS_0161/AA/288:294,
1/AA/486:487		No text annotation
homologous
IL_5J7L_026
NA
IL_8OIS_0171/AA/299:303,
1/AA/397:402		No text annotation
IL_8OIS_0501/AA/305:321,
1/AA/389:395		No text annotation
IL_8OIS_0181/AA/327:333,
1/AA/361:367		No text annotation
IL_8OIS_0191/AA/335:337,
1/AA/357:359		Isolated non-canonical cWW pair
geometric
IL_4LFB_010
IL_01003.6
IL_8OIS_0201/AA/339:341,
1/AA/352:355		No text annotation
IL_8OIS_0211/AA/373:375,
1/AA/382:383		Other IL
geometric
IL_3WBM_004
IL_18188.1
IL_8OIS_0221/AA/415:419,
1/AA/445:446		Left turn
homologous
IL_5J7L_036
NA
IL_8OIS_0231/AA/420:424,
1/AA/440:444		tSH-tWH-tHS
homologous
IL_4LFB_033
IL_05821.3
IL_8OIS_0241/AA/462:464,
1/AA/483:485		Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_01003.6
IL_8OIS_0251/AA/492:500,
1/AA/511:517		No text annotation
IL_8OIS_0261/AA/528:529,
1/AA/830:832		Single bulged A
homologous
IL_4LFB_035
IL_14190.4
IL_8OIS_0271/AA/531:533,
1/AA/827:828		Single bulged G
homologous
IL_6CZR_148
NA
IL_8OIS_0281/AA/539:543,
1/AA/817:821		C-loop
geometric
IL_8C3A_449
NA
IL_8OIS_0291/AA/561:562,
1/AA/708:710		Minor groove platform
homologous
IL_4LFB_038
IL_98469.1
IL_8OIS_0301/AA/597:605,
1/AA/693:698		No text annotation
IL_8OIS_0311/AA/606:608,
1/AA/691:692		Single bulged U
homologous
IL_5J7L_046
NA
IL_8OIS_0321/AA/610:614,
1/AA/687:689		Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.3
IL_8OIS_0331/AA/615:616,
1/AA/682:686		Minor groove platform
homologous
IL_6CZR_155
NA
IL_8OIS_0341/AA/618:619,
1/AA/678:680		Single bulged A
geometric
IL_5J7L_049
NA
IL_8OIS_0351/AA/619:621,
1/AA/676:678		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_8OIS_0361/AA/627:630,
1/AA/651:654		Double sheared
geometric
IL_1SA9_002
IL_58355.4
IL_8OIS_0371/AA/631:632,
1/AA/642:650		No text annotation
geometric
IL_8S95_001
IL_25652.1
IL_8OIS_0381/AA/741:746,
1/AA/766:771		No text annotation
IL_8OIS_0391/AA/836:838,
1/AA/919:922		No text annotation
homologous
IL_5J7L_058
NA
IL_8OIS_0511/AA/838:841,
1/AA/915:919		No text annotation
homologous
IL_5J7L_059
NA
IL_8OIS_0411/AA/842:844,
1/AA/912:914		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_8OIS_0421/AA/844:848,
1/AA/907:912		Partly complementary
homologous
IL_6CZR_167
NA
IL_8OIS_0431/AA/853:857,
1/AA/899:902		UAA/GAN related
geometric
IL_2R8S_002
IL_77691.7
IL_8OIS_0441/AA/860:863,
1/AA/893:896		Tandem non-canonical cWW pairs
geometric
IL_5TBW_128
NA
IL_8OIS_0451/AA/863:864,
1/AA/891:893		Single bulged C
geometric
IL_3SN2_002
IL_05642.5
IL_8OIS_0461/AA/864:867,
1/AA/888:891		No text annotation
IL_8OIS_0531/AA/869:874,
1/AA/882:886		No text annotation

Problematic loops

#loop idProblemSequence
IL_8OIS_040No text annotation
IL_8OIS_052No text annotation
IL_8OIS_047Isolated non-canonical cWW pair
IL_8OIS_048Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8OIS_0011/AA/30:33,
1/AA/219:225,
1/AA/270:273		No text annotation
J3_8OIS_0021/AA/40:43,
1/AA/176:183,
1/AA/209:211		No text annotation
J3_8OIS_0081/AA/326:327,
1/AA/367:373,
1/AA/383:384		No text annotation
J3_8OIS_0031/AA/545:547,
1/AA/781:787,
1/AA/809:815		No text annotation
J3_8OIS_0041/AA/551:554,
1/AA/717:719,
1/AA/774:777		No text annotation
homologous
J3_4LFB_003
J3_44359.3
J3_8OIS_0051/AA/563:569,
1/AA/580:591,
1/AA/704:707		No text annotation
J3_8OIS_0091/AA/621:626,
1/AA/655:661,
1/AA/670:676		No text annotation
homologous
J3_4LFB_007
J3_01343.1
J3_8OIS_0101/AA/719:723,
1/AA/735:741,
1/AA/771:774		No text annotation
J4_8OIS_0011/AA/51:54,
1/AA/61:68,
1/AA/153:155,
1/AA/164:170		No text annotation
J4_8OIS_0021/AA/70:77,
1/AA/103:106,
1/AA/142:144,
1/AA/150:151		No text annotation
J4_8OIS_0031/AA/294:296,
1/AA/405:410,
1/AA/451:462,
1/AA/485:486		No text annotation
homologous
J4_5J7L_003
NA
J4_8OIS_0041/AG/7:10,
1/AG/22:24,
1/AG/40:45,
1/AG/60:61		No text annotation

Problematic loops

#loop idProblemSequence
J3_8OIS_006No text annotation
J3_8OIS_007No text annotation

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