HL_8OIS_023

3D structure

PDB id

8OIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCC(RSQ)AUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: RSQ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIS_023 not in the Motif Atlas

Geometric match to HL_4TUE_034

Geometric discrepancy: 0.0917

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8OIS|1|AG|G|28
8OIS|1|AG|C|29
8OIS|1|AG|C|30
8OIS|1|AG|RSQ|31
8OIS|1|AG|A|32
8OIS|1|AG|U|33
8OIS|1|AG|A|34
8OIS|1|AG|C|35
8OIS|1|AG|C|36

Current chains

Chain AG

P-site Met-tRNA(Met)

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AI

mRNA

Chain Aa

Peptide chain release factor 1, mitochondrial,mtRF1(AAQ)

Chain Ag

28S ribosomal protein S9, mitochondrial