HL_8OIT_028

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAA(1MA)UAG

Length

9 nucleotides

Bulged bases

8OIT|1|B8|U|948

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIT_028 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.216

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8OIT|1|B8|C|942
8OIT|1|B8|U|943
8OIT|1|B8|U|944
8OIT|1|B8|A|945
8OIT|1|B8|A|946
8OIT|1|B8|1MA|947
8OIT|1|B8|U|948
8OIT|1|B8|A|949
8OIT|1|B8|G|950

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BS

39S ribosomal protein L14, mitochondrial