HL_8OIT_030

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIT_030 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.2291

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8OIT|1|B8|C|1101
8OIT|1|B8|C|1102
8OIT|1|B8|A|1103
8OIT|1|B8|C|1104
8OIT|1|B8|A|1105
8OIT|1|B8|G|1106

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BO

39S ribosomal protein L9, mitochondrial