HL_8OIT_043
3D structure
- PDB id
- 8OIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAACACAAA
- Length
- 10 nucleotides
- Bulged bases
- 8OIT|1|B9|U|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIT_043 not in the Motif Atlas
- Geometric match to HL_5B63_003
- Geometric discrepancy: 0.2452
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8OIT|1|B9|U|12
8OIT|1|B9|U|13
8OIT|1|B9|A|14
8OIT|1|B9|A|15
8OIT|1|B9|C|16
8OIT|1|B9|A|17
8OIT|1|B9|C|18
8OIT|1|B9|A|19
8OIT|1|B9|A|20
8OIT|1|B9|A|21
Current chains
- Chain B9
- CP Val-tRNA(Val)
Nearby chains
- Chain BW
- 39S ribosomal protein L18, mitochondrial
- Chain Ba
- 39S ribosomal protein L52, mitochondrial
- Chain Bn
- 39S ribosomal protein L38, mitochondrial
Coloring options: