HL_8OIT_044
3D structure
- PDB id
- 8OIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AACUUACAC(PSU)U
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIT_044 not in the Motif Atlas
- Geometric match to HL_5IB8_208
- Geometric discrepancy: 0.3643
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8OIT|1|B9|A|28
8OIT|1|B9|A|29
8OIT|1|B9|C|30
8OIT|1|B9|U|31
8OIT|1|B9|U|32
8OIT|1|B9|A|33
8OIT|1|B9|C|34
8OIT|1|B9|A|35
8OIT|1|B9|C|36
8OIT|1|B9|PSU|37
8OIT|1|B9|U|38
Current chains
- Chain B9
- CP Val-tRNA(Val)
Nearby chains
- Chain BD
- 39S ribosomal protein L27, mitochondrial
- Chain BW
- 39S ribosomal protein L18, mitochondrial
- Chain Bd
- 39S ribosomal protein L55, mitochondrial
- Chain Bn
- 39S ribosomal protein L38, mitochondrial
- Chain Bp
- 39S ribosomal protein L40, mitochondrial
- Chain Bv
- 39S ribosomal protein L46, mitochondrial
- Chain Bw
- 39S ribosomal protein L48, mitochondrial
Coloring options: