HL_8OJ0_073
3D structure
- PDB id
- 8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCAAACGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8OJ0|1|5|A|4214, 8OJ0|1|5|C|4221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OJ0_073 not in the Motif Atlas
- Homologous match to HL_8P9A_166
- Geometric discrepancy: 0.1127
- The information below is about HL_8P9A_166
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.1
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8OJ0|1|5|U|4210
8OJ0|1|5|C|4211
8OJ0|1|5|A|4212
8OJ0|1|5|A|4213
8OJ0|1|5|A|4214
8OJ0|1|5|C|4215
8OJ0|1|5|G|4216
8OJ0|1|5|G|4217
8OJ0|1|5|U|4218
8OJ0|1|5|A|4219
8OJ0|1|5|A|4220
8OJ0|1|5|C|4221
8OJ0|1|5|G|4222
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LI
- Ribosomal protein uL16-like
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
Coloring options: