HL_8OJ5_027
3D structure
- PDB id
- 8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OJ5_027 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.1536
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8OJ5|1|5|A|2376
8OJ5|1|5|C|2377
8OJ5|1|5|G|2378
8OJ5|1|5|A|2379
8OJ5|1|5|G|2380
8OJ5|1|5|A|2381
8OJ5|1|5|A|2382
8OJ5|1|5|C|2383
8OJ5|1|5|U|2384
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- DDRGK domain-containing protein 1
- Chain LP
- 60S ribosomal protein L17
- Chain LR
- 60S ribosomal protein L19
- Chain Ld
- 60S ribosomal protein L31
Coloring options: