RNA 3D Hub //

8OJ5 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8OJ5_0011/5/37:44No text annotation
homologous
HL_5TBW_001
NA
HL_8OJ5_0021/5/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_8OJ5_0031/5/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_8OJ5_0041/5/131:137No text annotation
geometric
HL_4WF9_003
HL_75660.7
HL_8OJ5_0051/5/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_8OJ5_0061/5/222:226No text annotation
homologous
HL_5TBW_006
NA
HL_8OJ5_0071/5/230:238T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_8OJ5_0081/5/289:298No text annotation
homologous
HL_5TBW_008
NA
HL_8OJ5_0091/5/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_8OJ5_0101/5/368:373GNRA
homologous
HL_8C3A_010
NA
HL_8OJ5_0111/5/393:398GNRA
homologous
HL_8C3A_011
NA
HL_8OJ5_0121/5/1178:1183Mini UNCG
geometric
HL_1ZBH_001
HL_12626.2
HL_8OJ5_0131/5/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_8OJ5_0701/5/1364:1373No text annotation
HL_8OJ5_0151/5/1389:1394GNRA
homologous
HL_5TBW_016
NA
HL_8OJ5_0161/5/1436:1448Externally structured
geometric
HL_8C3A_022
NA
HL_8OJ5_0171/5/1561:1566GNRA
homologous
HL_8C3A_019
NA
HL_8OJ5_0181/5/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_8OJ5_0191/5/1627:1635No text annotation
homologous
HL_8C3A_021
NA
HL_8OJ5_0201/5/1675:1680Externally structured
homologous
HL_5TBW_022
NA
HL_8OJ5_0221/5/1816:1823No text annotation
homologous
HL_5TBW_024
NA
HL_8OJ5_0231/5/1864:1870GNRA
homologous
HL_8C3A_025
NA
HL_8OJ5_0241/5/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_8OJ5_0251/5/2257:2261Mini UNCG
geometric
HL_4V9F_041
HL_90436.2
HL_8OJ5_0261/5/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_8OJ5_0271/5/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8OJ5_0281/5/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_8OJ5_0291/5/2458:2463GNRA variation
homologous
HL_5TBW_033
NA
HL_8OJ5_0301/5/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_8OJ5_0321/5/2578:2583GNRA
homologous
HL_5TBW_036
NA
HL_8OJ5_0331/5/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_8OJ5_0341/5/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_8OJ5_0351/5/2705:2710No text annotation
geometric
HL_4V9F_003
HL_75660.7
HL_8OJ5_0361/5/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_8OJ5_0371/5/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_8OJ5_0381/5/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_8OJ5_0391/5/2872:2877UNCG
homologous
HL_8C3A_043
NA
HL_8OJ5_0411/5/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_8OJ5_0421/5/3639:3649No text annotation
homologous
HL_5TBW_046
NA
HL_8OJ5_0431/5/3668:3674GNRA
homologous
HL_5TBW_047
NA
HL_8OJ5_0441/5/3724:3729GNRA
homologous
HL_5TBW_048
NA
HL_8OJ5_0451/5/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_8OJ5_0461/5/3873:3882No text annotation
homologous
HL_5TBW_051
NA
HL_8OJ5_0491/5/4193:4201No text annotation
homologous
HL_8C3A_055
NA
HL_8OJ5_0501/5/4210:4222No text annotation
homologous
HL_5TBW_055
NA
HL_8OJ5_0511/5/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_8OJ5_0521/5/4270:4277Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_8OJ5_0531/5/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_8OJ5_0541/5/4321:4326GNRA
homologous
HL_5TBW_059
NA
HL_8OJ5_0551/5/4352:4362No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_8OJ5_0561/5/4417:4425No text annotation
homologous
HL_5TBW_061
NA
HL_8OJ5_0571/5/4474:4481No text annotation
homologous
HL_5TBW_062
NA
HL_8OJ5_0581/5/4497:4503No text annotation
geometric
HL_5TBW_063
NA
HL_8OJ5_0591/5/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_8OJ5_0601/5/4603:4608GNRA
homologous
HL_5TBW_065
NA
HL_8OJ5_0611/5/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8OJ5_0621/5/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_8OJ5_0631/5/4907:4914No text annotation
geometric
HL_2Y9H_003
HL_75660.7
HL_8OJ5_0641/5/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_8OJ5_0711/7/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_8OJ5_0651/7/36:41No text annotation
homologous
HL_8C3A_073
NA
HL_8OJ5_0661/7/86:91GNRA
homologous
HL_8C3A_074
NA
HL_8OJ5_0671/8/47:56No text annotation
geometric
HL_7RQB_001
NA
HL_8OJ5_0691/8/107:112No text annotation
homologous
HL_5TBW_075
NA

Problematic loops

#loop idProblemSequence
HL_8OJ5_014No text annotation
HL_8OJ5_021No text annotation
HL_8OJ5_031GNRA
HL_8OJ5_040No text annotation
HL_8OJ5_047No text annotation
HL_8OJ5_048No text annotation
HL_8OJ5_068No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8OJ5_0011/5/6:7,
1/8/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_8OJ5_0021/5/12:14,
1/8/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_8OJ5_0031/5/16:18,
1/8/139:141		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.2
IL_8OJ5_0041/5/26:27,
1/5/55:57		Single stack bend
homologous
IL_5TBW_004
NA
IL_8OJ5_0051/5/30:37,
1/5/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_8OJ5_0061/5/81:88,
1/5/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_8OJ5_0071/5/118:122,
1/5/147:153		No text annotation
IL_8OJ5_0081/5/125:126,
1/5/142:144		Single bulged C
geometric
IL_1DQF_001
NA
IL_8OJ5_0091/5/169:173,
1/5/263:266		No text annotation
IL_8OJ5_0121/5/195:196,
1/5/244:246		Single bulged C
geometric
IL_1DQF_001
NA
IL_8OJ5_0131/5/199:201,
1/5/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_8OJ5_0141/5/339:342,
1/8/32:33		Minor groove platform
geometric
IL_7RQB_073
NA
IL_8OJ5_0151/5/348:350,
1/8/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_8OJ5_0161/5/387:390,
1/5/401:414		No text annotation
homologous
IL_5TBW_014
NA
IL_8OJ5_0171/5/415:421,
1/8/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_8OJ5_0181/5/443:446,
1/5/1300:1304		No text annotation
geometric
IL_7MLW_007
IL_49140.1
IL_8OJ5_0191/5/448:450,
1/5/1297:1298		No text annotation
IL_8OJ5_0201/5/459:460,
1/5/695:697		Single bulged C
geometric
IL_3W3S_001
IL_05642.2
IL_8OJ5_0211/5/462:464,
1/5/691:693		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_8OJ5_0221/5/466:472,
1/5/682:689		No text annotation
IL_8OJ5_0231/5/482:485,
1/5/671:672		Multiple bulged bases
geometric
IL_1R3E_001
IL_05670.1
IL_8OJ5_0241/5/487:488,
1/5/665:669		Minor groove platform
geometric
IL_5J7L_247
NA
IL_8OJ5_0261/5/709:710,
1/5/1286:1288		Single bulged G
geometric
IL_4LFB_036
IL_28408.2
IL_8OJ5_0271/5/723:724,
1/5/942:945		Multiple bulged bases
geometric
IL_1R3E_001
IL_05670.1
IL_8OJ5_0281/5/727:731,
1/5/938:939		No text annotation
IL_8OJ5_0291/5/732:735,
1/5/928:937		No text annotation
IL_8OJ5_0301/5/737:740,
1/5/924:926		No text annotation
geometric
IL_5J7L_341
NA
IL_8OJ5_0311/5/740:742,
1/5/922:924		Isolated non-canonical cWW pair
geometric
IL_3GM7_002
IL_01003.2
IL_8OJ5_0321/5/745:752,
1/5/911:919		No text annotation
geometric
IL_5TBW_020
NA
IL_8OJ5_0331/5/1073:1074,
1/5/1237:1239		Single bulged A
geometric
IL_2VPL_002
IL_14190.2
IL_8OJ5_0351/5/1082:1084,
1/5/1213:1217		Isolated cWS basepair
geometric
IL_4WF9_034
NA
IL_8OJ5_0361/5/1086:1087,
1/5/1209:1211		Single bulged C
geometric
IL_3W3S_001
IL_05642.2
IL_8OJ5_0371/5/1096:1097,
1/5/1198:1200		Single bulged G
geometric
IL_4V9F_041
IL_28408.2
IL_8OJ5_0391/5/1172:1175,
1/5/1186:1189		Tandem non-canonical cWW pairs
geometric
IL_1MFQ_004
IL_15225.2
IL_8OJ5_0401/5/1244:1245,
1/5/1265:1267		Single bulged G
geometric
IL_4V88_442
NA
IL_8OJ5_0411/5/1357:1360,
1/5/1379:1382		No text annotation
IL_8OJ5_1721/5/1357:1361,
1/5/1376:1382		No text annotation
IL_8OJ5_0421/5/1360:1361,
1/5/1376:1379		Multiple bulged bases
geometric
IL_1R3E_002
IL_05670.1
IL_8OJ5_0431/5/1425:1429,
1/5/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_67427.1
IL_8OJ5_0441/5/1431:1434,
1/5/1450:1453		Double sheared
geometric
IL_4LFB_060
IL_58355.2
IL_8OJ5_0451/5/1467:1468,
1/5/1496:1498		Single bulged A
homologous
IL_5TBW_024
NA
IL_8OJ5_0461/5/1474:1476,
1/5/1488:1490		Isolated non-canonical cWW contact
geometric
IL_5UNE_001
IL_87720.1
IL_8OJ5_0471/5/1520:1522,
1/5/1655:1657		Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_8OJ5_0481/5/1522:1526,
1/5/1648:1655		tHW-tHW cross-strand stack
homologous
IL_5TBW_028
NA
IL_8OJ5_0491/5/1545:1546,
1/5/1612:1614		Single bulged A
homologous
IL_8C3A_031
NA
IL_8OJ5_0501/5/1550:1551,
1/5/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_8OJ5_0511/5/1551:1555,
1/5/1572:1576		Triple sheared
geometric
IL_4V9F_027
IL_15190.2
IL_8OJ5_0521/5/1586:1589,
1/5/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_8OJ5_0531/5/1590:1592,
1/5/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_8OJ5_0541/5/1624:1626,
1/5/1636:1640		No text annotation
homologous
IL_8C3A_036
NA
IL_8OJ5_0551/5/1671:1673,
1/5/1682:1684		Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_8OJ5_0561/5/1686:1688,
1/5/1848:1851		No text annotation
IL_8OJ5_0581/5/1723:1725,
1/5/1838:1839		Single bulged G
homologous
IL_8C3A_040
NA
IL_8OJ5_0591/5/1732:1737,
1/5/1792:1797		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_8OJ5_0601/5/1737:1738,
1/5/1790:1792		Minor groove platform
geometric
IL_5TBW_039
NA
IL_8OJ5_0611/5/1739:1744,
1/5/1786:1789		C-loop
homologous
IL_5TBW_040
NA
IL_8OJ5_1771/5/1746:1749,
1/5/1781:1784		Tandem non-canonical cWW pairs
homologous
IL_8CRE_044
NA
IL_8OJ5_0631/5/1749:1751,
1/5/1779:1781		Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_8OJ5_0641/5/1753:1756,
1/5/1776:1777		Major groove minor groove platform; mini C-loop
geometric
IL_4LFB_025
IL_73108.2
IL_8OJ5_0661/5/1814:1816,
1/5/1823:1824		Single bulged G
geometric
IL_4V88_442
NA
IL_8OJ5_0671/5/1858:1860,
1/5/1874:1876		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_8OJ5_0691/5/1905:1909,
1/5/2067:2071		UAA/GAN
homologous
IL_5TBW_048
NA
IL_8OJ5_0701/5/1911:1918,
1/5/2064:2065		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_8OJ5_0711/5/1918:1920,
1/5/2063:2064		No text annotation
IL_8OJ5_0721/5/1920:1922,
1/5/2062:2063		No text annotation
IL_8OJ5_0731/5/1926:1933,
1/5/2053:2058		No text annotation
geometric
IL_5TBW_051
NA
IL_8OJ5_0741/5/1933:1944,
1/5/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_8OJ5_0751/5/1946:1948,
1/5/2035:2036		Single bulged U
homologous
IL_5TBW_053
NA
IL_8OJ5_0761/5/1957:1965,
1/5/2022:2026		Kink-turn
homologous
IL_8C3A_057
NA
IL_8OJ5_0771/5/2083:2085,
1/5/2272:2273		Single bulged C
geometric
IL_4C7O_003
IL_05642.2
IL_8OJ5_0781/5/2290:2292,
1/5/2342:2345		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_8OJ5_0791/5/2299:2301,
1/5/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_8OJ5_0801/5/2302:2309,
1/5/2329:2333		Kink-turn
homologous
IL_5TBW_059
NA
IL_8OJ5_0811/5/2312:2314,
1/5/2325:2326		Single bulged A
homologous
IL_5TBW_060
NA
IL_8OJ5_0821/5/2358:2364,
1/5/3858:3863		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_8OJ5_0831/5/2415:2419,
1/5/2427:2429		C-loop
geometric
IL_7A0S_047
IL_06671.1
IL_8OJ5_0841/5/2446:2450,
1/5/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8OJ5_0851/5/2477:2479,
1/5/2499:2500		Minor groove platform
geometric
IL_4V88_412
NA
IL_8OJ5_0871/5/2549:2550,
1/5/2768:2770		Single bulged U
geometric
IL_2A64_002
IL_97561.2
IL_8OJ5_0881/5/2589:2593,
1/5/2752:2756		Triple sheared
homologous
IL_5TBW_067
NA
IL_8OJ5_0891/5/2613:2614,
1/5/2724:2726		Single bulged C
homologous
IL_5TBW_069
NA
IL_8OJ5_0901/5/2614:2615,
1/5/2722:2724		Single stack bend
geometric
IL_5TBW_070
NA
IL_8OJ5_0911/5/2646:2648,
1/5/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.1
IL_8OJ5_0921/5/2651:2653,
1/5/2681:2682		Single bulged G
geometric
IL_5J7L_019
NA
IL_8OJ5_0931/5/2656:2662,
1/5/2672:2678		Kink-turn
homologous
IL_5TBW_073
NA
IL_8OJ5_0941/5/2704:2705,
1/5/2710:2712		No text annotation
IL_8OJ5_0951/5/2832:2838,
1/5/3850:3853		No text annotation
homologous
IL_5TBW_074
NA
IL_8OJ5_0961/5/2844:2846,
1/5/3842:3844		Isolated tWW turn
homologous
IL_5TBW_075
NA
IL_8OJ5_0971/5/2847:2850,
1/5/3840:3841		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_8OJ5_1731/5/2847:2855,
1/5/3837:3841		No text annotation
homologous
IL_8C3A_484
NA
IL_8OJ5_0981/5/2850:2855,
1/5/3837:3840		No text annotation
homologous
IL_8C3A_083
NA
IL_8OJ5_0991/5/2867:2872,
1/5/2877:2883		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_20700.1
IL_8OJ5_1001/5/2889:2891,
1/5/3610:3612		Isolated non-canonical cWW pair
homologous
IL_5TBW_079
NA
IL_8OJ5_1011/5/2896:2897,
1/5/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_8OJ5_1021/5/3632:3633,
1/5/3827:3829		Single bulged A
homologous
IL_5TBW_082
NA
IL_8OJ5_1031/5/3660:3665,
1/5/3677:3684		Kink-turn related
homologous
IL_5TBW_083
NA
IL_8OJ5_1041/5/3700:3703,
1/5/3749:3750		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_8OJ5_1051/5/3704:3705,
1/5/3745:3748		Major groove intercalation
geometric
IL_7A0S_067
IL_77710.1
IL_8OJ5_1061/5/3708:3710,
1/5/3741:3742		Single bulged U
homologous
IL_5TBW_086
NA
IL_8OJ5_1071/5/3710:3714,
1/5/3739:3741		Other IL
geometric
IL_4PDB_001
IL_70784.1
IL_8OJ5_1081/5/3715:3721,
1/5/3732:3738		No text annotation
homologous
IL_8C3A_093
NA
IL_8OJ5_1091/5/3780:3781,
1/5/3811:3814		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_8OJ5_1101/5/3781:3792,
1/5/3808:3811		No text annotation
homologous
IL_5TBW_090
NA
IL_8OJ5_1111/5/3895:3898,
1/5/4563:4565		Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_8OJ5_1121/5/3900:3902,
1/5/4558:4561		Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_8OJ5_1131/5/3913:3915,
1/5/4388:4389		Single bulged U
homologous
IL_8C3A_098
NA
IL_8OJ5_1141/5/3916:3917,
1/5/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_8OJ5_1151/5/3927:3929,
1/5/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_8OJ5_1161/5/3950:3952,
1/5/4060:4062		Isolated non-canonical cWW pair
geometric
IL_4LFB_006
IL_01003.2
IL_8OJ5_1171/5/3955:3967,
1/5/4055:4057		Isolated non-canonical cWW pair
geometric
IL_5TBW_378
NA
IL_8OJ5_1181/5/3967:3970,
1/5/4052:4055		Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_8OJ5_1191/5/4082:4088,
1/5/4161:4164		No text annotation
homologous
IL_5TBW_096
NA
IL_8OJ5_1201/5/4095:4097,
1/5/4112:4113		No text annotation
IL_8OJ5_1211/5/4191:4192,
1/5/4202:4204		Single bulged A
homologous
IL_8C3A_107
NA
IL_8OJ5_1221/5/4243:4245,
1/5/4263:4267		Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_8OJ5_1231/5/4291:4293,
1/5/4317:4318		Single bulged A
geometric
IL_4V88_399
NA
IL_8OJ5_1241/5/4295:4298,
1/5/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_8OJ5_1251/5/4347:4350,
1/5/4364:4365		Single stack bend
geometric
IL_5J7L_032
NA
IL_8OJ5_1261/5/4400:4401,
1/5/4442:4444		Major groove platform
homologous
IL_5TBW_102
NA
IL_8OJ5_1741/5/4400:4403,
1/5/4440:4444		No text annotation
homologous
IL_8C3A_111
NA
IL_8OJ5_1271/5/4401:4403,
1/5/4440:4442		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_8OJ5_1281/5/4403:4405,
1/5/4439:4440		Major groove platform
geometric
IL_5TBW_104
NA
IL_8OJ5_1291/5/4405:4407,
1/5/4435:4439		Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_8OJ5_1301/5/4412:4416,
1/5/4426:4430		No text annotation
homologous
IL_8C3A_114
NA
IL_8OJ5_1311/5/4453:4454,
1/5/4526:4528		Major groove platform
homologous
IL_5TBW_107
NA
IL_8OJ5_1321/5/4456:4458,
1/5/4520:4524		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_8OJ5_1331/5/4458:4459,
1/5/4517:4520		Multiple bulged bases
homologous
IL_5TBW_109
NA
IL_8OJ5_1341/5/4466:4468,
1/5/4489:4491		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_8OJ5_1751/5/4466:4470,
1/5/4485:4491		No text annotation
IL_8OJ5_1351/5/4468:4470,
1/5/4485:4489		No text annotation
IL_8OJ5_1361/5/4495:4497,
1/5/4503:4505		Isolated non-canonical cWW pair
homologous
IL_5TBW_112
NA
IL_8OJ5_1381/5/4537:4538,
1/5/4547:4549		Single bulged A
homologous
IL_5TBW_113
NA
IL_8OJ5_1391/5/4580:4582,
1/5/4721:4723		No text annotation
geometric
IL_3ICQ_003
NA
IL_8OJ5_1401/5/4582:4585,
1/5/4717:4721		Other IL
geometric
IL_4WF9_054
IL_74317.1
IL_8OJ5_1411/5/4590:4592,
1/5/4618:4620		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_8OJ5_1421/5/4596:4603,
1/5/4608:4614		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8OJ5_1431/5/4624:4629,
1/5/4669:4673		No text annotation
IL_8OJ5_1441/5/4632:4637,
1/5/4662:4666		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_8OJ5_1451/5/4638:4640,
1/5/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_018
IL_10892.2
IL_8OJ5_1461/5/4641:4642,
1/5/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_8OJ5_1471/5/4680:4685,
1/5/4705:4710		UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_8OJ5_1481/5/4740:4742,
1/5/4958:4959		Single bulged C
geometric
IL_4C7O_003
IL_05642.2
IL_8OJ5_1491/5/4743:4746,
1/5/4954:4957		Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_8OJ5_1501/5/4749:4751,
1/5/4948:4951		No text annotation
IL_8OJ5_1511/5/4756:4765,
1/5/4869:4877		No text annotation
IL_8OJ5_1521/5/4769:4771,
1/5/4863:4865		Isolated non-canonical cWW pair
geometric
IL_2OE5_001
IL_71625.2
IL_8OJ5_1761/5/4885:4889,
1/5/4930:4934		Triple non-canonical cWW pairs
geometric
IL_8S95_002
IL_71154.2
IL_8OJ5_1541/5/4891:4896,
1/5/4924:4928		No text annotation
IL_8OJ5_1551/5/4899:4901,
1/5/4920:4921		Single bulged C
geometric
IL_7KGA_001
IL_05642.2
IL_8OJ5_1571/5/4972:4975,
1/5/4983:4986		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_8OJ5_1581/5/4992:4994,
1/5/5057:5059		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_01003.2
IL_8OJ5_1591/5/4996:4997,
1/5/5053:5055		Major groove intercalation
geometric
IL_5TBW_085
NA
IL_8OJ5_1601/5/5000:5002,
1/5/5045:5050		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_8OJ5_1611/5/5003:5009,
1/5/5039:5044		No text annotation
IL_8OJ5_1621/5/5012:5014,
1/5/5035:5036		Single bulged U
homologous
IL_8C3A_140
NA
IL_8OJ5_1631/5/5014:5017,
1/5/5032:5035		Double sheared
geometric
IL_4V9F_100
IL_58355.2
IL_8OJ5_1641/7/15:16,
1/7/62:64		Single bulged A
homologous
IL_8C3A_143
NA
IL_8OJ5_1651/7/21:27,
1/7/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_8OJ5_1661/7/28:29,
1/7/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_8OJ5_1671/7/32:36,
1/7/41:45		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_8OJ5_1681/7/71:78,
1/7/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_148
NA
IL_8OJ5_1691/7/79:81,
1/7/95:97		Isolated non-canonical cWW pair
geometric
IL_5TBW_034
NA
IL_8OJ5_1701/7/82:85,
1/7/92:94		Isolated non-canonical cWW pair
homologous
IL_8C3A_149
NA
IL_8OJ5_1711/8/64:66,
1/8/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_8OJ5_010Isolated non-canonical cWW pair
IL_8OJ5_011No text annotation
IL_8OJ5_025Single stack bend
IL_8OJ5_034No text annotation
IL_8OJ5_038Isolated non-canonical cWW pair
IL_8OJ5_057No text annotation
IL_8OJ5_062No text annotation
IL_8OJ5_065Isolated non-canonical cWW pair
IL_8OJ5_068No text annotation
IL_8OJ5_086Self complementary
IL_8OJ5_137No text annotation
IL_8OJ5_153No text annotation
IL_8OJ5_156Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8OJ5_0011/5/112:116,
1/5/155:160,
1/5/275:278		No text annotation
J3_8OJ5_0121/5/196:199,
1/5/215:228,
1/5/240:244		No text annotation
J3_8OJ5_0131/5/351:367,
1/5/374:379,
1/8/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_8OJ5_0141/5/380:387,
1/5/414:415,
1/8/19:20		No text annotation
geometric
J3_5TBW_002
NA
J3_8OJ5_0151/5/380:390,
1/5/401:415,
1/8/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_8OJ5_0161/5/451:455,
1/5/701:705,
1/5/1292:1296		No text annotation
J3_8OJ5_0171/5/712:713,
1/5/955:976,
1/5/1278:1284		No text annotation
J3_8OJ5_0021/5/1531:1537,
1/5/1622:1624,
1/5/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_8OJ5_0031/5/1546:1548,
1/5/1580:1584,
1/5/1609:1612		No text annotation
homologous
J3_8C3A_004
NA
J3_8OJ5_0181/5/1726:1727,
1/5/1802:1806,
1/5/1832:1837		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_8OJ5_0041/5/2393:2399,
1/5/2805:2807,
1/5/2819:2822		No text annotation
homologous
J3_8C3A_006
NA
J3_8OJ5_0051/5/2402:2405,
1/5/2785:2791,
1/5/2800:2802		No text annotation
homologous
J3_5TBW_009
NA
J3_8OJ5_0191/5/2440:2445,
1/5/2515:2519,
1/5/2536:2537		No text annotation
homologous
J3_8P9A_055
J3_94309.1
J3_8OJ5_0201/5/2451:2456,
1/5/2465:2476,
1/5/2501:2508		No text annotation
J3_8OJ5_0061/5/2551:2555,
1/5/2572:2575,
1/5/2757:2767		No text annotation
J3_8OJ5_0211/5/2575:2576,
1/5/2585:2589,
1/5/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_8OJ5_0221/5/2598:2602,
1/5/2737:2738,
1/5/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_8OJ5_0071/5/3937:3939,
1/5/4074:4078,
1/5/4168:4173		Kink-turn 3-way junction
geometric
J3_5J7L_044
NA
J3_8OJ5_0081/5/4091:4094,
1/5/4114:4129,
1/5/4155:4158		No text annotation
homologous
J3_8C3A_009
NA
J3_8OJ5_0231/5/4228:4230,
1/5/4331:4342,
1/5/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_8OJ5_0091/5/4241:4243,
1/5/4267:4269,
1/5/4278:4283		No text annotation
homologous
J3_5TBW_013
NA
J3_8OJ5_0101/5/4463:4466,
1/5/4491:4493,
1/5/4507:4513		No text annotation
homologous
J3_5TBW_014
NA
J3_8OJ5_0251/5/4751:4754,
1/5/4879:4883,
1/5/4936:4948		No text annotation
J3_8OJ5_0111/5/4970:4972,
1/5/4986:4991,
1/5/5060:5063		No text annotation
J3_8OJ5_0261/7/9:14,
1/7/65:66,
1/7/109:110		No text annotation
homologous
J3_8P9A_066
J3_26985.1
J3_8OJ5_0271/8/44:45,
1/8/58:64,
1/8/95:99		No text annotation
homologous
J3_8C3A_060
NA
J4_8OJ5_0011/5/111:112,
1/5/278:283,
1/5/304:310,
1/5/327:330		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_8OJ5_0021/5/196:199,
1/5/215:222,
1/5/226:228,
1/5/240:244		No text annotation
J4_8OJ5_0031/5/981:983,
1/5/1070:1072,
1/5/1240:1243,
1/5/1268:1273		No text annotation
J4_8OJ5_0041/5/2365:2371,
1/5/2389:2391,
1/5/2824:2829,
1/5/3856:3857		No text annotation
J4_8OJ5_0051/5/2406:2410,
1/5/2434:2439,
1/5/2538:2539,
1/5/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_8OJ5_0061/5/2618:2619,
1/5/2637:2642,
1/5/2692:2698,
1/5/2718:2719		No text annotation
J4_8OJ5_0071/5/3634:3638,
1/5/3650:3654,
1/5/3690:3694,
1/5/3821:3826		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_8OJ5_0081/5/3696:3698,
1/5/3752:3753,
1/5/3771:3780,
1/5/3814:3819		No text annotation
homologous
J4_8P9A_018
J4_42306.1
J4_8OJ5_0091/5/4231:4235,
1/5/4289:4291,
1/5/4318:4319,
1/5/4328:4330		No text annotation
J4_8OJ5_0101/5/4231:4235,
1/5/4289:4293,
1/5/4317:4319,
1/5/4328:4330		No text annotation
homologous
J4_8P9A_019
J4_59590.1
J4_8OJ5_0111/5/4587:4590,
1/5/4620:4621,
1/5/4676:4678,
1/5/4712:4715		No text annotation
J5_8OJ5_0011/5/19:21,
1/8/35:42,
1/8/101:106,
1/8/113:114,
1/8/136:138		No text annotation
homologous
J5_8P9A_010
J5_27223.1
J5_8OJ5_0021/5/1335:1340,
1/5/1516:1519,
1/5/1658:1661,
1/5/2288:2290,
1/5/2345:2351		No text annotation
homologous
J5_8P9A_011
J5_08384.1
J5_8OJ5_0031/5/2855:2863,
1/5/2887:2888,
1/5/3613:3614,
1/5/3618:3626,
1/5/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_8OJ5_0041/5/3903:3910,
1/5/4392:4400,
1/5/4444:4453,
1/5/4528:4534,
1/5/4552:4557		No text annotation
J5_8OJ5_0051/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4228,
1/5/4375:4381		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_8OJ5_0011/5/21:26,
1/5/57:67,
1/5/74:78,
1/5/105:109,
1/5/332:339,
1/8/33:35		No text annotation
J6_8OJ5_0021/5/1352:1355,
1/5/1384:1388,
1/5/1395:1399,
1/5/1418:1421,
1/5/1464:1466,
1/5/1499:1504		No text annotation
J6_8OJ5_0031/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4230,
1/5/4331:4342,
1/5/4370:4381		No text annotation
J7_8OJ5_0011/5/1666:1671,
1/5/1684:1685,
1/5/1852:1855,
1/5/1879:1884,
1/5/1895:1899,
1/5/2077:2078,
1/5/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_8OJ5_024No text annotation

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