HL_8OJ5_033

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8OJ5|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ5_033 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2111

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8OJ5|1|5|G|2624
8OJ5|1|5|U|2625
8OJ5|1|5|U|2626
8OJ5|1|5|C|2627
8OJ5|1|5|U|2628
8OJ5|1|5|C|2629
8OJ5|1|5|U|2630
8OJ5|1|5|U|2631
8OJ5|1|5|U|2632

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22