HL_8OJ8_013

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

8OJ8|1|5|U|1179, 8OJ8|1|5|C|1180, 8OJ8|1|5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ8_013 not in the Motif Atlas

Geometric match to HL_1ZBH_001

Geometric discrepancy: 0.1432

The information below is about HL_1ZBH_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8OJ8|1|5|G|1178
8OJ8|1|5|U|1179
8OJ8|1|5|C|1180
8OJ8|1|5|C|1181
8OJ8|1|5|C|1182
8OJ8|1|5|C|1183

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

Ribosomal protein uL16-like