HL_8OJ8_039

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8OJ8|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ8_039 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.1416

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OJ8|1|5|U|2810
8OJ8|1|5|G|2811
8OJ8|1|5|A|2812
8OJ8|1|5|A|2813
8OJ8|1|5|C|2814
8OJ8|1|5|A|2815
8OJ8|1|5|G|2816

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19