HL_8OJ8_041

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUAGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ8_041 not in the Motif Atlas

Homologous match to HL_8C3A_044

Geometric discrepancy: 0.5477

The information below is about HL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28980.2

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

8OJ8|1|5|G|2901
8OJ8|1|5|G|2902
8OJ8|1|5|U|3595
8OJ8|1|5|A|3596
8OJ8|1|5|G|3597
8OJ8|1|5|C|3598

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19