HL_8OJ8_057

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ8_057 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1449

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8OJ8|1|5|C|4417
8OJ8|1|5|G|4418
8OJ8|1|5|U|4419
8OJ8|1|5|U|4420
8OJ8|1|5|C|4421
8OJ8|1|5|A|4422
8OJ8|1|5|U|4423
8OJ8|1|5|A|4424
8OJ8|1|5|G|4425

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Lm

Ubiquitin-60S ribosomal protein L40