HL_8ONY_003

3D structure

PDB id

8ONY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human Methionine Aminopeptidase 2 at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8ONY|1|5|G|2421, 8ONY|1|5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ONY_003 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1779

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8ONY|1|5|A|2420
8ONY|1|5|G|2421
8ONY|1|5|C|2422
8ONY|1|5|A|2423
8ONY|1|5|G|2424
8ONY|1|5|U|2425
8ONY|1|5|U|2426

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19