8ONY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8ONY_001 | 1/5/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8ONY_002 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8ONY_003 | 1/5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_8ONY_004 | 1/5/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_8ONY_005 | 1/5/2704:2712 | UNCG | geometric HL_1KUQ_001 HL_61337.3 | |
| HL_8ONY_007 | 1/8/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_8ONY_008 | 1/8/68:90 | No text annotation | homologous HL_8C3A_075 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8ONY_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8ONY_001 | 1/5/387:390, 1/5/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_8ONY_002 | 1/5/2415:2419, 1/5/2427:2429 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
| IL_8ONY_003 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_8ONY_004 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8ONY_001 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation | homologous J3_8C3A_060 NA |
Problematic loops
No problematic loops
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